Resolve R CMD check failures

SomaLogic / SomaPlotr

A highly specialized suite of standardized plotting routines based on the "Grammar of Graphics" framework of mapping variables to aesthetics used in 'ggplot2'. Graphics types are biased towards visualizing SomaScan (proteomic) data.

Other

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Overview of Pull Request

The OS specified for GHA checks and tests was recently updated from ubuntu-latest to macos-12. This has resulted in failures for both R CMD checks and testing suites when GHA PR checks are performed, when they previously were consistently passing. There must be a mismatch in the environments used by GHA checks and the SomaPlotr developers/maintainers, which needs to be resolved so that GHA checks match checks performed locally.

The *.yaml config files for GHA need updates to better sync these environments.

Internal Use Only

Change Type

Please check the relevant box(es):

[ ] New feature (no API change; @amanda-hi, @stufield)
[x] Bug fix (no API change -> fixes an issue; @amanda-hi, @stufield)
[ ] Breaking change (fix or feature with API change; @amanda-hi, @stufield)
[ ] Documentation update (@SLbmangum, @kmurugesan14)
[ ] Package maintenance (structural, non-code, non-breaking changes; @stufield)
[ ] README change (@SLbmangum, @kmurugesan14, @nmcnabbSL)
[ ] LICENSE changes (@SLbmangum)

Reviewer by Department

Department	Reviewer	Change Type
Bioinformatics	@amanda-hi	Code, bugs, features
	@stufield	bugs, features
Legal	@SLbmangum	LICENSE
Product	@kmurugesan14	Documentation
Regulatory	@nmcnabbSL	Documentation

Codecov Report

Attention: Patch coverage is 25.00000% with 3 lines in your changes are missing coverage. Please review.

Project coverage is 44.74%. Comparing base (e013c80) to head (7b2d9bb). Report is 20 commits behind head on main.

:exclamation: Current head 7b2d9bb differs from pull request most recent head fab0ac6. Consider uploading reports for the commit fab0ac6 to get more accurate results

Files	Patch %	Lines
R/style-risk.R	0.00%	2 Missing :warning:
R/style-soma.R	50.00%	1 Missing :warning:

Files

Patch %

Lines

0.00%

50.00%

:exclamation: Your organization needs to install the Codecov GitHub app to enable full functionality.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #40 +/- ## ========================================== + Coverage 42.89% 44.74% +1.85% ========================================== Files 29 29 Lines 1119 1104 -15 ========================================== + Hits 480 494 +14 + Misses 639 610 -29 ```

SomaLogic / SomaPlotr