Pipeline streamlining and improvements - Githubissues

SorenKarst / longread_umi

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Pipeline streamlining and improvements #15

Closed SorenKarst closed 4 years ago

SorenKarst commented 4 years ago

Improvements

Pipeline tools accessed through an initiation script.
Tools more streamlined.
Access to more settings allows the pipeline to work on custom libraries.
PacBio pipeline.
Name formating improved.
Medaka processing optimized.
UMI binning improved to utilize more data.
Added barcode demultiplexing.

Fixes

Fixes #8 ValueError found when run test_read.fq