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SorenKarst / longread_umi

GNU General Public License v3.0
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Issues with install script #36

Open walexandertsu opened 4 years ago

walexandertsu commented 4 years ago

Hi Soren, thank you so much for developing this tool! I'm very excited to use it as I think it will solve many problems I'm having. However, when I install via the script, conda doesn't seem to recognize the longread_umi environment. I'm using Ubuntu 18.04, so I'm unsure if that could be causing the problem. Any thoughts?

SorenKarst commented 4 years ago

Hi walexandertsu!

Thank you for using the pipeline and sorry about the installation issues.

I had similar problems myself and I believe (but I am not sure) that some of the conda hacks I have used in the installation script have become deprecated in the recent version of conda.

I have made a fix in the development version of the pipeline, which you can install with the following commands:

wget https://raw.githubusercontent.com/SorenKarst/longread_umi/develop/scripts/install_conda.sh

bash ./install_conda.sh develop

Let me know if this doesn't solve your problems.

All the best Søren