SorenKarst / longread_umi

GNU General Public License v3.0
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All pipelines hidden due to install directory name #37

Open bmilash opened 3 years ago

bmilash commented 3 years ago

I installed the software in an anaconda environment under a directory named "installdir". The longreadumi.sh script mechanism that finds the pipelines removes any line with the string "install" in it, so none of the pipelines were visible! I changed the pattern to "install" and that fixed the problem on my system. I wonder if a better mechanism might be:

find $LONGREAD_UMIPATH/scripts -name "*.sh" -print | sed -e '/install[a-z]*.sh/d' ...

SorenKarst commented 3 years ago

Hi,

That is not optimal. I have added a fix to the development version, which will be available in the next release.

Regards Søren

bmilash commented 3 years ago

Thanks Søren!