Catch error in issue #35 where no reference UMIs are produced

SorenKarst / longread_umi

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Catch error in issue #35 where no reference UMIs are produced #38

Open aaronsaunders opened 3 years ago

aaronsaunders commented 3 years ago

I made a simple test to catch the error in issue #35. It counts the sequences in the output of umi12cf.fa . The script exits if there are zero sequences an gives an error message that suggests what the problem may have been (based on your text in the issue).

SorenKarst commented 3 years ago

Hi Aaron,

This is great! The pipeline needs a lot more checks like this.

I will include your pull request in the development version after the next release.

Regards Søren

aaronsaunders commented 3 years ago

I am more than happy to make a contribution. Thanks for the pipeline.