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SoundAg / sounDMR

Differentially methylated region analysis from Oxford Nanopore Technologies data
Apache License 2.0
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Problem in creating dmr_obj #64

Closed PraddyumnaR closed 2 months ago

PraddyumnaR commented 2 months ago

i am getting

experimental_design_df <- "Sample_expdesign.csv" dmr_obj <- create_dmr_obj(Methylframe, experimental_design_df) [1] "Step 1: removing rows that contain 0 methylation" [1] "Step 2: checking for missing columns in experimental id" [1] "Gene not found in the ZoomFrame_filtered" [1] "Gene column not found, running analysis on Chromosome column" Error in create_dmr_obj(Methylframe, experimental_design_df) : No Plant or Individual column name found in Experimental ID. One is necessary to continue

This error while generating dmr object I have added Individual and Plant column in the Sample_expdesign csv file for demo run of given example data on sounDMR but it is showing the same error please guide.

PraddyumnaR commented 2 months ago

got the solution closing the issue