search

SouradiptoC / CodonU

A python project for analysis of codon usage for gene or genome analysis
https://github.com/SouradiptoC/CodonU
MIT License
18 stars 1 forks source link

Unable to import CodonU.analyzer #2

Closed laxeye closed 1 year ago

laxeye commented 1 year ago

from CodonU import analyzer as an

leads to

ModuleNotFoundError Traceback (most recent call last) Cell In[1], line 1 ----> 1 from CodonU import analyzer as an

File ~/conda/lib/python3.10/site-packages/CodonU/analyzer/init.py:1 ----> 1 from .cai_comp import calculate_cai 2 from .rscu_comp import calculate_rscu 3 from .cbi_comp import calculate_cbi

File ~/conda/lib/python3.10/site-packages/CodonU/analyzer/cai_comp.py:1 ----> 1 from cai2 import CAI 2 from warnings import filterwarnings 3 from Bio.Data.CodonTable import unambiguous_dna_by_id

ModuleNotFoundError: No module named 'cai2'

Python 3.10.11 CodonU 1.0.4

SouradiptoC commented 1 year ago

I am working on some improvements and soon an updated version will be released. Till then, you can manually install cai2 package from pypi. The package should work fine

SouradiptoC commented 1 year ago

The new update is now available. The issue will not occur now @laxeye.