SouthForkResearch / CHaMP-Metric-Generation-R-Scripts

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Fish Cover and substrate #4

Open volkcj opened 7 years ago

volkcj commented 7 years ago

It appears that the VisitID's that have problems are the ones where the field "SumFishCover" isn't equal to 100%. There's a line in the method stating "Criteria: Sum of Fish Cover for site is >= 90%". I'm not sure what that means - Sitka still has the metrics for cases where one or more Channel Unit violates that criteria. Ignoreing any results where one or more Channel Units violates the criteria, I get the same results as Sitka (except for round off error).

Should we worry about this and/or try to find out what Sitka is/was doing for these fields? (It's also worth noting that, with only a single exception, the only VisitID's where this looks like a problem are low numbered VisitIDs - 436 or less, so these are all 2011 metrics except a single one that's from 2014).

nahorniak email on 1/18/17

volkcj commented 7 years ago

Exclude the channel units with cover estimate totals <90. when doing this, exclude these channel units from the total channel unit area used to normalize the substrate estimates.

e.g. if units 9 and 11 have substrate estimate totals of 80 and 55, do not include the channel unit areas of units 9 and 11 as part of the 'total channel unit area'.

This should also fix fish cover.