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Spatial-Systems-Biology-Freiburg
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eDPM
Explore Model Design Space by using the Fisher-Information
MIT License
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generate obs_fun, obs_dfdx, obs_dfdp autmatically if only choosing component of state variable
#28
jonaspleyer
closed
1 year ago
0
CLEANUP PYDANTIC MODEL DEFINITION
#27
jonaspleyer
closed
1 year ago
0
Documentation
#26
jonaspleyer
opened
1 year ago
0
Develop more discretization methods
#25
jonaspleyer
closed
1 year ago
0
Find a good name for the package
#24
jonaspleyer
closed
1 year ago
0
specifying identical_times=true for FisherModelParametrized does not change shape of times
#23
jonaspleyer
opened
1 year ago
0
use initial conditins of ODE as parameters
#22
jonaspleyer
closed
1 year ago
1
add option to possibly use different discretization penalty function
#21
jonaspleyer
closed
1 year ago
2
add variable in FisherResults to store discretization penalty results.
#20
jonaspleyer
closed
1 year ago
0
print output when starting solving/optimization routine
#19
jonaspleyer
closed
1 year ago
1
sample initial conditions of ODE
#18
jonaspleyer
closed
1 year ago
0
Deserialize FisherResult and store to file/database
#17
jonaspleyer
closed
1 year ago
0
check variable naming for consistency
#16
jonaspleyer
closed
1 year ago
1
finish scipy global optimization
#15
jonaspleyer
closed
1 year ago
0
implement covariance calculation
#14
jonaspleyer
closed
1 year ago
2
use observable in fischer information matrix
#13
jonaspleyer
closed
1 year ago
0
implement discretization penalty function
#12
jonaspleyer
closed
1 year ago
0
Write Readme describing the project
#11
jonaspleyer
opened
2 years ago
0
Add arguments to functions convert_S_matrix_to
#10
polinagaindrik
closed
2 years ago
0
cleanup commit b2e914742abf26f5ea20e7437fbbe81a1df595b0
#9
jonaspleyer
closed
2 years ago
1
Add uncertainty (variance) of the measurements in Fisher information matrix calulation
#8
polinagaindrik
closed
2 years ago
2
model design: no lag-phase
#7
jonaspleyer
closed
1 year ago
0
optimization structural: formalize starting and iteration procedure
#6
jonaspleyer
closed
1 year ago
1
sampling: implement continuous sampling of time and temperature values
#5
jonaspleyer
closed
1 year ago
0
plots: create experimental design plots
#4
jonaspleyer
closed
2 years ago
1
model design: generate more results with other observables
#3
jonaspleyer
closed
1 year ago
0
structural changes: uniy sorting_key and observable
#2
jonaspleyer
closed
1 year ago
3
Rework database saving
#1
jonaspleyer
closed
2 years ago
0