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SpatialHackathon / SpaceHack2023

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data_kidney_KPMP_VISIUM #101

Open FADHLyemen opened 10 months ago

Jieran-S commented 9 months ago

Hi, I'm checking the google sheet for data section. Is this the dataset related to row 14 the Visium data on human Kidney with reference https://www.nature.com/articles/s41586-023-05769-3 ? Can I know if you're still implementing the dataset? thanks!

FADHLyemen commented 9 months ago

@Jieran-S Yes, I already implemented it and tested it.

Jieran-S commented 9 months ago

Awesome!! I couldn't find the folder for your data at the main branch. Could you point me to the folder for your results? Thank you!

FADHLyemen commented 9 months ago

/home/jovyan/scratch/SpaceHack2/data/KPMP_KIDNEY

download script is /home/jovyan/scratch/SpaceHack2/data/KPMP_KIDNEY/downLoad_KPMP_data.ipynb

test scrip is 'scratch/SpaceHack2/test_scripts/test_data_wo_download_KPMP.sh'

FADHLyemen commented 9 months ago

@Jieran-S did you find them?

Jieran-S commented 9 months ago

Yes! Thank you! I might do some modifications so we can loop them on github as well --- Will discuss this with Naveed and keep you updated! Thanks for implementing them :))