Some issues I found in the current implementation:
Some implementation omits customized preprocess steps: DeepST. did @shdam find anything from the methods you worked on?
Some implementations don't use existing neighbor graphs: scanpy, seurat, SOTIP all use standard scanpy or seurat neighbor construction methods. They can use existing neighbor graphs
Clustering using resolution instead of clusters_number: SOTIP, SpaceFlow, STAGATE, SCAN-IT. Can implement grid-search to convert resolution into cluster_number definition.
Would these issues make sense? if so I will update them @niklasmueboe @naveedishaque
Some issues I found in the current implementation:
Some implementation omits customized preprocess steps: DeepST. did @shdam find anything from the methods you worked on?
Some implementations don't use existing neighbor graphs: scanpy, seurat, SOTIP all use standard scanpy or seurat neighbor construction methods. They can use existing neighbor graphs
Clustering using
resolution
instead ofclusters_number
: SOTIP, SpaceFlow, STAGATE, SCAN-IT. Can implement grid-search to convertresolution
intocluster_number
definition.Would these issues make sense? if so I will update them @niklasmueboe @naveedishaque