SpatialHackathon / SpaceHack2023

MIT No Attribution
16 stars 3 forks source link

Data cosmx liver #303

Closed kbiharie closed 5 months ago

kbiharie commented 6 months ago

Closes #301

Adds 2 cosmx liver samples (cancer and healthy), containing domain and celltype annotations. Datasets were tested using scanpy, since spaGCN ran into memory issues when calculating neighbours. See image for ground truth labels (left) and scanpy clustering (right).

image