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SpatialMap / SpatialMapDev

MIT License
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TSNE duplicates #13

Closed Kohze closed 6 years ago

Kohze commented 6 years ago

While implementing the T-SNE / PCA toggle functionality i faced the issue that some datasets apparently have an error with active method = "t-SNE" regarding duplicates (while PCA works) kmzj2hzvrs2ci-1g5jdxua

checking duplicates in exprs(object) turned out to have indeed a duplicated entry. xzapxsqmtbwygrgx2tbfrq

Since we need a direct pipleline to add the T-SNE columns via the function call on the object, im wondering if an additional filter step might be usefull for the pRoloc plot2D tsne function.

edit: the dataset name is E14TG2aS1

lgatto commented 6 years ago

Yes, that is well known for t-SNE. I'll add a filter with adequate message.

lgatto commented 6 years ago

Done in latest version (commit 61a83b43715bfb284cfc2d91fdb6b5cec1619689).