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SpatialTranscriptomicsResearch / st_pipeline

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
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add temp folder to samtools sort #103

Closed jsh58 closed 5 years ago

jsh58 commented 5 years ago

The temp folder was missing from the temp output prefix in the samtools sort call. This led to crashes when multiple instances overwrote each other.