ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
when I run the st_pipeline_run.py, it shows
Traceback (most recent call last):
File "/hpcwork/nm514167/dbitseq_rna/st_pipeline_run.py", line 22, in
from stpipeline.core.pipeline import Pipeline
File "/home/nm514167/miniconda3/envs/Dbit/lib/python3.7/site-packages/stpipeline/core/pipeline.py", line 12, in
from stpipeline.common.dataset import createDataset
File "/home/nm514167/miniconda3/envs/Dbit/lib/python3.7/site-packages/stpipeline/common/dataset.py", line 13, in
from stpipeline.common.unique_events_parser import parse_unique_events
ImportError: /home/nm514167/miniconda3/envs/Dbit/lib/python3.7/site-packages/stpipeline/common/unique_events_parser.cpython-37m-x86_64-linux-gnu.so: undefined symbol: _intel_fast_memcmp
I don't know what's the problem and how to fix it.
xianliaogithub
commented
1 year ago
when I run the st_pipeline_run.py, it shows Traceback (most recent call last): File "/hpcwork/nm514167/dbitseq_rna/st_pipeline_run.py", line 22, in
from stpipeline.core.pipeline import Pipeline
File "/home/nm514167/miniconda3/envs/Dbit/lib/python3.7/site-packages/stpipeline/core/pipeline.py", line 12, in
from stpipeline.common.dataset import createDataset
File "/home/nm514167/miniconda3/envs/Dbit/lib/python3.7/site-packages/stpipeline/common/dataset.py", line 13, in
from stpipeline.common.unique_events_parser import parse_unique_events
ImportError: /home/nm514167/miniconda3/envs/Dbit/lib/python3.7/site-packages/stpipeline/common/unique_events_parser.cpython-37m-x86_64-linux-gnu.so: undefined symbol: _intel_fast_memcmp
I don't know what's the problem and how to fix it.