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SpatialTranscriptomicsResearch
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st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
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Parallel filter input 4 v1.6.0
#83
elhb
closed
6 years ago
0
Merge from base
#82
jfnavarro
closed
6 years ago
0
Merge from base
#81
jfnavarro
closed
6 years ago
0
Added a warning for gene name duplication
#80
elhb
closed
6 years ago
4
Merge pull request #66 from SpatialTranscriptomicsResearch/master
#79
jfnavarro
closed
6 years ago
0
Fixed a small bug with the new commandline argument --star-sort-mem-limit
#78
elhb
closed
6 years ago
0
Merge from base
#77
jfnavarro
closed
6 years ago
0
Merge from base
#76
jfnavarro
closed
6 years ago
0
Merge pull request #63 from SpatialTranscriptomicsResearch/master
#75
jfnavarro
closed
6 years ago
0
first fix
#74
elhb
closed
6 years ago
0
sklearn not in requirements.txt
#73
elhb
closed
6 years ago
0
Merge from base
#72
jfnavarro
closed
6 years ago
0
Merge from base
#71
jfnavarro
closed
6 years ago
0
Merge pull request #60 from SpatialTranscriptomicsResearch/master
#70
jfnavarro
closed
6 years ago
0
fixing the sam/bam format
#69
elhb
closed
6 years ago
0
Merge from base
#68
jfnavarro
closed
6 years ago
0
Merge pull request #58 from SpatialTranscriptomicsResearch/master
#67
jfnavarro
closed
6 years ago
0
minor changes for subprocessing STAR with bam input
#66
elhb
closed
6 years ago
0
Merge from origin
#65
jfnavarro
closed
6 years ago
0
Test anntotation parallel
#64
jfnavarro
closed
6 years ago
0
Merge from origin
#63
jfnavarro
closed
6 years ago
0
missed to commit these lines last time
#62
elhb
closed
6 years ago
0
Merge from base
#61
jfnavarro
closed
7 years ago
0
Merge from base
#60
jfnavarro
closed
7 years ago
0
Merge from base
#59
jfnavarro
closed
7 years ago
0
Output to bam
#58
jfnavarro
closed
7 years ago
0
Bugfix
#57
elhb
closed
7 years ago
0
Proof of concept coordinate parser
#56
jfnavarro
closed
7 years ago
0
Small update to qa script
#55
Alexander-Stuckey
closed
6 years ago
2
Update from master
#54
Alexander-Stuckey
closed
7 years ago
0
Script now outputs qc info to file prefixed by the input file name, h…
#53
Alexander-Stuckey
closed
7 years ago
0
Merge from base
#52
jfnavarro
closed
7 years ago
0
Merge from base
#51
jfnavarro
closed
7 years ago
0
Merge from base
#50
jfnavarro
closed
7 years ago
0
Merge from base
#49
jfnavarro
closed
7 years ago
0
Faster infile decompression
#48
jfnavarro
closed
7 years ago
0
Adjust script to work with the new output format from ST aligner webtool
#47
Alexander-Stuckey
closed
7 years ago
0
Merge from base
#46
jfnavarro
closed
7 years ago
0
Merge from base
#45
jfnavarro
closed
7 years ago
0
Merge from base
#44
jfnavarro
closed
7 years ago
0
Merge from base
#43
jfnavarro
closed
7 years ago
0
Merge from base
#42
jfnavarro
closed
7 years ago
0
Merge from base
#41
jfnavarro
closed
7 years ago
0
Merge from base
#40
jfnavarro
closed
7 years ago
0
Merge from base
#39
jfnavarro
closed
7 years ago
0
Merge from base
#38
jfnavarro
closed
7 years ago
0
Merge from base
#37
jfnavarro
closed
7 years ago
0
Merge from base
#36
jfnavarro
closed
7 years ago
0
Merge from base
#35
jfnavarro
closed
7 years ago
0
Merge from base
#34
jfnavarro
closed
7 years ago
0
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