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SpeciesFileGroup / install_taxonworks

Instructions for installing and running TaxonWorks
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docker-compose build failed due to ruby version #14

Closed JeGoi closed 6 years ago

JeGoi commented 6 years ago

I've restart from scratch the README.md

$ docker-compose build
[...]
Step 20/23 : COPY Gemfile /app
 ---> 68862ef27233
Step 21/23 : COPY Gemfile.lock /app
 ---> f702256d0bc5
Step 22/23 : RUN bundle install
 ---> Running in 192dcfc46758
Don't run Bundler as root. Bundler can ask for sudo if it is needed, and
installing your bundle as root will break this application for all non-root
users on this machine.
Your Ruby version is 2.4.3, but your Gemfile specified 2.4.4
ERROR: Service 'app' failed to build: The command '/bin/sh -c bundle install' returned a non-zero code: 18
mjy commented 6 years ago

Do you have the lastest source on development branch?

JeGoi commented 6 years ago

I guess the answer is yes:

$ git status
On branch development
Your branch is up-to-date with 'origin/development'.
nothing to commit, working directory clean
mjy commented 6 years ago

@JeGoi Are you using rvm for Ruby? If so just switch to 2.4.4 before you build.

JeGoi commented 6 years ago

@mjy I've to find why ...

Your Ruby version is 2.4.3, but your Gemfile specified 2.4.4
ERROR: Service 'app' failed to build: The command '/bin/sh -c bundle install' returned a non-zero code: 18
$
$ ruby --version
ruby 2.4.4p296 (2018-03-28 revision 63013) [x86_64-linux]
$ rvm list

rvm rubies

=* ruby-2.4.4 [ x86_64 ]

# => - current
# =* - current && default
#  * - default

$ rvm use
RVM used your Gemfile for selecting Ruby, it is all fine - Heroku does that too,
you can ignore these warnings with 'rvm rvmrc warning ignore ./Gemfile'.
To ignore the warning for all files run 'rvm rvmrc warning ignore allGemfiles'.

Using ~/.rvm/gems/ruby-2.4.4
$ 
$ which ruby
/usr/share/rvm/rubies/ruby-2.4.4/bin/ruby
$ aptitude search ruby2.4.3
$
$ rvm current
ruby-2.4.4
$ gem env
RubyGems Environment:
  - RUBYGEMS VERSION: 2.6.14.1
  - RUBY VERSION: 2.4.4 (2018-03-28 patchlevel 296) [x86_64-linux]
  - INSTALLATION DIRECTORY: ~/.rvm/gems/ruby-2.4.4
  - USER INSTALLATION DIRECTORY: ~/.gem/ruby/2.4.0
  - RUBY EXECUTABLE: /usr/share/rvm/rubies/ruby-2.4.4/bin/ruby
  - EXECUTABLE DIRECTORY: ~/.rvm/gems/ruby-2.4.4/bin
  - SPEC CACHE DIRECTORY: ~/.gem/specs
  - SYSTEM CONFIGURATION DIRECTORY: /etc
  - RUBYGEMS PLATFORMS:
    - ruby
    - x86_64-linux
  - GEM PATHS:
     - ~/.rvm/gems/ruby-2.4.4
     - ~/.rvm/gems/ruby-2.4.4@global
  - GEM CONFIGURATION:
     - :update_sources => true
     - :verbose => true
     - :backtrace => false
     - :bulk_threshold => 1000
  - REMOTE SOURCES:
     - https://rubygems.org/
  - SHELL PATH:
     - ~/.rvm/gems/ruby-2.4.4/bin
     - ~/.rvm/gems/ruby-2.4.4@global/bin
     - /usr/share/rvm/rubies/ruby-2.4.4/bin
     - /usr/share/rvm/bin
     - ~/.rvm/gems/ruby-2.4.4/bin
     - ~/.rvm/gems/ruby-2.4.4@global/bin
     - ~/.rvm/gems/ruby-2.4.4/bin
     - ~/.rvm/gems/ruby-2.4.4@global/bin
     - ~/.rvm/gems/ruby-2.4.4/bin
     - ~/.rvm/gems/ruby-2.4.4@global/bin
     - ~/.rvm/gems/ruby-2.4.4/bin
     - ~/.rvm/gems/ruby-2.4.4@global/bin
     - ~/.rvm/gems/ruby-2.4.4/bin
     - ~/.rvm/gems/ruby-2.4.4@global/bin
     - ~/.rvm/gems/ruby-2.4.1/bin
     - ~/.rvm/gems/ruby-2.4.1@global/bin
     - ~/.rvm/gems/ruby-2.4.1/bin
     - ~/.rvm/gems/ruby-2.4.1@global/bin
     - ~/.rvm/gems/ruby-2.4.4/bin
     - ~/.rvm/gems/ruby-2.4.4@global/bin
     - ~/.rvm/gems/ruby-2.4.4/bin
     - ~/.rvm/gems/ruby-2.4.4@global/bin
     - ~/.rvm/gems/ruby-2.4.1/bin
     - ~/.rvm/gems/ruby-2.4.1@global/bin
     - /usr/games
     - /usr/games
     - /usr/local/sbin
     - /usr/local/bin
     - /usr/sbin
     - /usr/bin
     - /sbin
     - /bin
     - /usr/games
     - /usr/local/games
     - /snap/bin
     - /usr/lib/jvm/java-7-oracle/bin
     - /usr/lib/jvm/java-7-oracle/db/bin
     - /usr/lib/jvm/java-7-oracle/jre/bin
     - /usr/lib/jvm/java-7-oracle/bin
     - /usr/lib/jvm/java-7-oracle/db/bin
     - /usr/lib/jvm/java-7-oracle/jre/bin
JeGoi commented 6 years ago

@mjy In fact, I had RUN ruby --version in Dockerfile.development and the answer is:

Step 8/24 : RUN ruby --version
 ---> Running in 5acb1a8e99b8
ruby 2.4.3p205 (2017-12-14 revision 61247) [x86_64-linux-gnu]

I'm wondering if it could came from this https://github.com/SpeciesFileGroup/taxonworks/blob/development/Dockerfile.development#L14 and this https://github.com/SpeciesFileGroup/taxonworks/blob/development/Dockerfile.development#L26 It does not install the right version

After few modifications (https://github.com/drecom/docker-ubuntu-ruby/blob/2.4.4/Dockerfile), I'm able to use the right version:

Step 17/34 : RUN ruby --version
 ---> Using cache
 ---> 3bd5ff18f5da
Step 18/34 : RUN gem  --version
 ---> Running in c6784172daa1
2.7.6

But then, I've another trouble:

Step 29/34 : RUN gem install bundler &&     bundler config --global path "$GEM_HOME" &&     bundle config --global bin "$GEM_HOME/bin" &&     mkdir /app
 ---> Running in 793314ee103d
Successfully installed bundler-1.16.1
Parsing documentation for bundler-1.16.1
Done installing documentation for bundler after 3 seconds
1 gem installed
/usr/local/rbenv/versions/2.4.4/lib/ruby/site_ruby/2.4.0/rubygems.rb:289:in `find_spec_for_exe': can't find gem bundler (>= 0.a) with executable bundler (Gem::GemNotFoundException)
    from /usr/local/rbenv/versions/2.4.4/lib/ruby/site_ruby/2.4.0/rubygems.rb:308:in `activate_bin_path'
    from /usr/local/rbenv/versions/2.4.4/bin/bundler:23:in `<main>'
ERROR: Service 'app' failed to build: The command '/bin/sh -c gem install bundler &&     bundler config --global path "$GEM_HOME" &&     bundle config --global bin "$GEM_HOME/bin" &&     mkdir /app' returned a non-zero code: 1

I' working on it

A problem came from:

Step 30/37 : RUN bundler config --global path "$GEM_HOME"
 ---> Running in fe574bfb3edc
/usr/local/rbenv/versions/2.4.4/lib/ruby/site_ruby/2.4.0/rubygems.rb:289:in `find_spec_for_exe': can't find gem bundler (>= 0.a) with executable bundler (Gem::GemNotFoundException)
    from /usr/local/rbenv/versions/2.4.4/lib/ruby/site_ruby/2.4.0/rubygems.rb:308:in `activate_bin_path'
    from /usr/local/rbenv/versions/2.4.4/bin/bundler:23:in `<main>'
ERROR: Service 'app' failed to build: The command '/bin/sh -c bundler config --global path "$GEM_HOME"' returned a non-zero code: 1

It's here: https://github.com/SpeciesFileGroup/taxonworks/blob/development/Dockerfile.development#L47 bundler config --global path "$GEM_HOME" && \ need to be bundle config --global path "$GEM_HOME" && \

JeGoi commented 6 years ago

@mjy So the building is working now. I'll send modifications.