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Workbench for biodiversity informatics.
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Importing dwc having issues with sex #3995

Closed teleaslamellatus closed 1 month ago

teleaslamellatus commented 1 month ago

Steps to reproduce the bug

1.using DWC importer
2.import
3. specimens with known sex are not imported
4. tried to change M to male or m, still does not import.

Screenshot

Screenshot 2024-07-17 at 12 33 42 PM

Expected behavior

It worked in sandbox (https://sandworm.taxonworks.org/tasks/dwca_import/index?import_dataset_id=249).

Additional Screenshots

No response

Environment

Sandbox, Production

Sandbox Used

No response

Version

No response

Browser Used

No response

LocoDelAssembly commented 1 month ago

image Do you have your production project like that? (Or al least including the same terms you have in the dataset)

debpaul commented 1 month ago

@teleaslamellatus (adding to what Hernán said) ... see https://docs.taxonworks.org/guide/import.html#controlled-vocabulary-terms where the above information needs to be in your database (use the Manage biocuration groups and classes, you can find also through the Manage Controlled Vocabs Task) before your upload.

teleaslamellatus commented 1 month ago

Thanks a lot, Debbie and Hernan, I think we created these biocuration group and classes in sandbox a while ago that I forgot about. I really liked the DWC import function at the end especially That it gave a table of errored lines with the error reason in one column.

Thanks again!

István Mikó PhD Collection Manager Department of Biological Sciences 117 Spaulding Life Sciences Building 38 Academic Way, Durham, NH 03824

On Wed, Jul 17, 2024 at 2:31 PM Debbie Paul @.***> wrote:

@teleaslamellatus https://github.com/teleaslamellatus (adding to what Hernán said) ... see https://docs.taxonworks.org/guide/import.html#controlled-vocabulary-terms where the above information needs to be in your database (use the Manage biocuration groups and classes, you can find also through the Manage Controlled Vocabs Task) before your upload.

— Reply to this email directly, view it on GitHub https://github.com/SpeciesFileGroup/taxonworks/issues/3995#issuecomment-2233987461, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACGX6JL5MOYABKK4ALTYKVDZM22BPAVCNFSM6AAAAABLA7X7VSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDEMZTHE4DONBWGE . You are receiving this because you were mentioned.Message ID: @.***>

mjy commented 1 month ago

@teleaslamellatus is this closable now?

teleaslamellatus commented 1 month ago

Yes!

Thanks!

István

On Sun, Aug 4, 2024 at 1:54 PM Matt @.***> wrote:

@teleaslamellatus https://github.com/teleaslamellatus is this closable now?

— Reply to this email directly, view it on GitHub https://github.com/SpeciesFileGroup/taxonworks/issues/3995#issuecomment-2267619754, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACGX6JIIPININHRY5ZX753TZPZTEHAVCNFSM6AAAAABLA7X7VSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDENRXGYYTSNZVGQ . You are receiving this because you were mentioned.Message ID: @.***>

-- István Mikó PhD Collection Manager Department of Biological Sciences 117 Spaulding Life Sciences Building 38 Academic Way, Durham, NH 03824