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SpheMakh / HI-Inator

Radio interefometry simulator/imager tailored for HI sky models.
GNU General Public License v2.0
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make run not working on exemple file #5

Closed chiaraf closed 9 years ago

chiaraf commented 9 years ago

Hi @SpheMakh. I get the following error message running make run on your exemple image:

2015/06/15 09:01:23 INFO: ## Mon Jun 15 09:01:23 2015: /code/depends/pyxis/Pyxis/bin/pyxis CFG=//input/parameters.json DESTDIR=//output OUTDIR=//output azishe 2015/06/15 09:01:23 PYXIS: running command azishe Traceback (most recent call last): File "/code/depends/pyxis/Pyxis/bin/pyxis", line 281, in Pyxis.Internals.run(commands); File "/code/depends/pyxis/Pyxis/Internals.py", line 1099, in run comcall(); File "./pyxis-hikat.py", line 146, in azishe ncores(nm) File "./pyxis-hikat.conf", line 11, in ncores n = int(0.6(psutil.NUM_CPUS - psutil.cpu_percent()/100*psutil.NUM_CPUS)) AttributeError: 'module' object has no attribute 'NUM_CPUS' 2015/06/15 09:01:23 ERROR: Exception raised, aborting

SpheMakh commented 9 years ago

I see the error: I'm fixing it now.

SpheMakh commented 9 years ago

The psutil in the container was different from the one on my machine. Update the repo, and all should be well.

chiaraf commented 9 years ago

I have run:

cd HI-Inator git pull origin master make force-build make run

And I get the following errors:

2015/06/15 10:39:08 PYXIS: per(MS_LSM,make_and_sim,persist=0): iterating over MS_LSM=//output/example_sim-0000.MS,example_sim-0000.fits //output/example_sim-0001.MS,example_sim-0001.fits 2015/06/15 10:39:08 PYXIS: splitting into 2 jobs, up to 1 MS_LSM's per job, staggered by 10s 2015/06/15 10:39:18 PYXIS: 2 jobs launched, waiting for finish 2015/06/15 10:39:18 ERROR: job #0 (MS_LSM=//output/example_sim-0000.MS,example_sim-0000.fits) exited with error status 1, waiting for 1 more jobs to complete 2015/06/15 10:39:18 ERROR: job #1 (MS_LSM=//output/example_sim-0001.MS,example_sim-0001.fits) exited with error status 1, waiting for 0 more jobs to complete 2015/06/15 10:39:18 ABORT: 2 of 2 jobs have failed 2015/06/15 10:39:18 ERROR: exiting with error code 1, check the logs for errors 2015/06/15 10:39:18 INFO: last logfile was //output/log-hisims.txt

In the log file:

...

2015/06/15 10:39:08 [0] WARNING: Error accessing //output/example_sim-0000.MS Traceback (most recent call last): File "/code/depends/pyxis/Pyxides/ms.py", line 470, in _msddid_accessed_Template ddtab = ms(subtable="DATA_DESCRIPTION"); File "/code/depends/pyxis/Pyxides/ms.py", line 66, in ms msname = table(msname,ack=False).getkeyword(subtable); File "/usr/lib/python2.7/dist-packages/pyrap/tables/table.py", line 319, in init Table.init (self, tabname, lockopt, opt); RuntimeError: Table //output/example_sim-0000.MS does not exist 2015/06/15 10:39:08 [0] INFO: You image is now LWIMAGER approved ;) Traceback (most recent call last): File "/code/depends/pyxis/Pyxis/Commands.py", line 303, in _per Pyxis.Internals.run(_commands); File "/code/depends/pyxis/Pyxis/Internals.py", line 1099, in run comcall(); File "./pyxis-hikat.py", line 189, in make_and_sim simsky(addnoise=addnoise, scalenoise=scalenoise, *_options) File "./pyxis-hikat.py", line 53, in simsky ms.set_default_spectral_info() File "/code/depends/pyxis/Pyxides/ms.py", line 522, in set_default_spectral_info tab = ms(subtable='SPECTRAL_WINDOW') File "/code/depends/pyxis/Pyxides/ms.py", line 66, in ms msname = table(msname,ack=False).getkeyword(subtable); File "/usr/lib/python2.7/dist-packages/pyrap/tables/table.py", line 319, in init Table.init (self, tabname, lockopt, opt); RuntimeError: Table //output/example_sim-0000.MS does not exist 2015/06/15 10:39:08 [0] ERROR: per-loop failed for //output/example_sim-0000.MS,example_sim-0000.fits 2015/06/15 10:39:18 PYXIS: 2 jobs launched, waiting for finish 2015/06/15 10:39:18 [1] PYXIS: started job 1 for //output/example_sim-0001.MS,example_sim-0001.fits 2015/06/15 10:39:18 ERROR: job #0 (MS_LSM=//output/example_sim-0000.MS,example_sim-0000.fits) exited with error status 1, waiting for 1 more jobs to complete 2015/06/15 10:39:18 [1] PYXIS: per-loop, setting MS_LSM=//output/example_sim-0001.MS,example_sim-0001.fits 2015/06/15 10:39:18 [1] PYXIS: running command make_and_sim 2015/06/15 10:39:18 [1] WARNING: Error accessing //output/example_sim-0001.MS ...