Closed JonathanAMichaels closed 11 months ago
I'm getting this error when trying to load a spikeglx recording of the new long neuropixels:
NotImplementedError: This meta file version of spikeglxis not implemented
I'm using the most recent spikeinterface installed from github today.
Here's the info from the meta file:
acqApLfSy=384,384,1 appVersion=20230905 fileCreateTime=2023-12-22T11:53:44 fileName=D://122223_g0/122223_g0_imec0/122223_g0_t0.imec0.ap.bin fileSHA1=58569735F67F75C7AEA059DDE8C3C78FEC6805DA fileSizeBytes=77965530720 fileTimeSecs=3375.1312 firstSample=3556716 gateMode=Immediate imAiRangeMax=0.6 imAiRangeMin=-0.6 imAnyChanFullBand=false imCalibrated=true imChan0apGain=500 imDatApi=3.62 imDatBs_fw=2.0.169 imDatBsc_fw=3.2.189 imDatBsc_hw=2.1 imDatBsc_pn=NP2_QBSC_00 imDatBsc_sn=207 imDatFx_hw=3.6 imDatFx_pn=NPNH_AFLEX_00 imDatFx_sn=0 imDatHs_hw=5.1 imDatHs_pn=NP2_HS_30 imDatHs_sn=835 imDatPrb_dock=1 imDatPrb_pn=NP1032 imDatPrb_port=4 imDatPrb_slot=2 imDatPrb_sn=22176116182 imDatPrb_type=1030 imErrFlags_IS_CT_SR_LK_PP_SY=0 0 0 0 0 0 imIsSvyRun=false imLEDEnable=false imLowLatency=false imMaxInt=512 imSampRate=30000 imStdby= imSvyMaxBnk=11 imSvySecPerBnk=15 imTipLength=373 imTrgRising=true imTrgSource=0 imroFile= nDataDirs=1 nSavedChans=385 snsApLfSy=384,0,1 snsSaveChanSubset=0:383,768 syncImInputSlot=2 syncSourceIdx=0 syncSourcePeriod=1 trigMode=Immediate typeImEnabled=1 typeNiEnabled=0 typeObEnabled=0 typeThis=imec userNotes= ~imroTbl=(1030,384)(0 0 0 500 250 1)(1 0 0 500 250 1)(2 0 0 500 250 1)(3 0 0 500 250 1)(4 0 0 500 250 1)(5 0 0 500 250 1)(6 0 0 500 250 1)(7 0 0 500 250 1)(8 0 0 500 250 1)(9 0 0 500 250 1)(10 0 0 500 250 1)(11 0 0 500 250 1)(12 0 0 500 250 1)(13 0 0 500 250 1)(14 0 0 500 250 1)(15 0 0 500 250 1)(16 0 0 500 250 1)(17 0 0 500 250 1)(18 0 0 500 250 1)(19 0 0 500 250 1)(20 0 0 500 250 1)(21 0 0 500 250 1)(22 0 0 500 250 1)(23 0 0 500 250 1)(24 0 0 500 250 1)(25 0 0 500 250 1)(26 0 0 500 250 1)(27 0 0 500 250 1)(28 0 0 500 250 1)(29 0 0 500 250 1)(30 0 0 500 250 1)(31 0 0 500 250 1)(32 0 0 500 250 1)(33 0 0 500 250 1)(34 0 0 500 250 1)(35 0 0 500 250 1)(36 0 0 500 250 1)(37 0 0 500 250 1)(38 0 0 500 250 1)(39 0 0 500 250 1)(40 0 0 500 250 1)(41 0 0 500 250 1)(42 0 0 500 250 1)(43 0 0 500 250 1)(44 0 0 500 250 1)(45 0 0 500 250 1)(46 0 0 500 250 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~snsChanMap=(384,384,1)(AP0;0:0)(AP1;1:1)(AP2;2:2)(AP3;3:3)(AP4;4:4)(AP5;5:5)(AP6;6:6)(AP7;7:7)(AP8;8:8)(AP9;9:9)(AP10;10:10)(AP11;11:11)(AP12;12:12)(AP13;13:13)(AP14;14:14)(AP15;15:15)(AP16;16:16)(AP17;17:17)(AP18;18:18)(AP19;19:19)(AP20;20:20)(AP21;21:21)(AP22;22:22)(AP23;23:23)(AP24;24:24)(AP25;25:25)(AP26;26:26)(AP27;27:27)(AP28;28:28)(AP29;29:29)(AP30;30:30)(AP31;31:31)(AP32;32:32)(AP33;33:33)(AP34;34:34)(AP35;35:35)(AP36;36:36)(AP37;37:37)(AP38;38:38)(AP39;39:39)(AP40;40:40)(AP41;41:41)(AP42;42:42)(AP43;43:43)(AP44;44:44)(AP45;45:45)(AP46;46:46)(AP47;47:47)(AP48;48:48)(AP49;49:49)(AP50;50:50)(AP51;51:51)(AP52;52:52)(AP53;53:53)(AP54;54:54)(AP55;55:55)(AP56;56:56)(AP57;57:57)(AP58;58:58)(AP59;59:59)(AP60;60:60)(AP61;61:61)(AP62;62:62)(AP63;63:63)(AP64;64:64)(AP65;65:65)(AP66;66:66)(AP67;67:67)(AP68;68:68)(AP69;69:69)(AP70;70:70)(AP71;71:71)(AP72;72:72)(AP73;73:73)(AP74;74:74)(AP75;75:75)(AP76;76:76)(AP77;77:77)(AP78;78:78)(AP79;79:79)(AP80;80:80)(AP81;81:81)(AP82;82:82)(AP83;83:83)(AP84;84:84)(AP85;85:85)(AP86;86:86)(AP87;87:87)(AP88;88:88)(AP89;89:89)(AP90;90:90)(AP91;91:91)(AP92;92:92)(AP93;93:93)(AP94;94:94)(AP95;95:95)(AP96;96:96)(AP97;97:97)(AP98;98:98)(AP99;99:99)(AP100;100:100)(AP101;101:101)(AP102;102:102)(AP103;103:103)(AP104;104:104)(AP105;105:105)(AP106;106:106)(AP107;107:107)(AP108;108:108)(AP109;109:109)(AP110;110:110)(AP111;111:111)(AP112;112:112)(AP113;113:113)(AP114;114:114)(AP115;115:115)(AP116;116:116)(AP117;117:117)(AP118;118:118)(AP119;119:119)(AP120;120:120)(AP121;121:121)(AP122;122:122)(AP123;123:123)(AP124;124:124)(AP125;125:125)(AP126;126:126)(AP127;127:127)(AP128;128:128)(AP129;129:129)(AP130;130:130)(AP131;131:131)(AP132;132:132)(AP133;133:133)(AP134;134:134)(AP135;135:135)(AP136;136:136)(AP137;137:137)(AP138;138:138)(AP139;139:139)(AP140;140:140)(AP141;141:141)(AP142;142:142)(AP143;143:143)(AP144;144:144)(AP145;145:145)(AP146;146:146)(AP147;147:147)(AP148;148:148)(AP149;149:149)(AP150;150:150)(AP151;151:151)(AP152;152:152)(AP153;153:153)(AP154;154:154)(AP155;155:155)(AP156;156:156)(AP157;157:157)(AP158;158:158)(AP159;159:159)(AP160;160:160)(AP161;161:161)(AP162;162:162)(AP163;163:163)(AP164;164:164)(AP165;165:165)(AP166;166:166)(AP167;167:167)(AP168;168:168)(AP169;169:169)(AP170;170:170)(AP171;171:171)(AP172;172:172)(AP173;173:173)(AP174;174:174)(AP175;175:175)(AP176;176:176)(AP177;177:177)(AP178;178:178)(AP179;179:179)(AP180;180:180)(AP181;181:181)(AP182;182:182)(AP183;183:183)(AP184;184:184)(AP185;185:185)(AP186;186:186)(AP187;187:187)(AP188;188:188)(AP189;189:189)(AP190;190:190)(AP191;191:191)(AP192;192:192)(AP193;193:193)(AP194;194:194)(AP195;195:195)(AP196;196:196)(AP197;197:197)(AP198;198:198)(AP199;199:199)(AP200;200:200)(AP201;201:201)(AP202;202:202)(AP203;203:203)(AP204;204:204)(AP205;205:205)(AP206;206:206)(AP207;207:207)(AP208;208:208)(AP209;209:209)(AP210;210:210)(AP211;211:211)(AP212;212:212)(AP213;213:213)(AP214;214:214)(AP215;215:215)(AP216;216:216)(AP217;217:217)(AP218;218:218)(AP219;219:219)(AP220;220:220)(AP221;221:221)(AP222;222:222)(AP223;223:223)(AP224;224:224)(AP225;225:225)(AP226;226:226)(AP227;227:227)(AP228;228:228)(AP229;229:229)(AP230;230:230)(AP231;231:231)(AP232;232:232)(AP233;233:233)(AP234;234:234)(AP235;235:235)(AP236;236:236)(AP237;237:237)(AP238;238:238)(AP239;239:239)(AP240;240:240)(AP241;241:241)(AP242;242:242)(AP243;243:243)(AP244;244:244)(AP245;245:245)(AP246;246:246)(AP247;247:247)(AP248;248:248)(AP249;249:249)(AP250;250:250)(AP251;251:251)(AP252;252:252)(AP253;253:253)(AP254;254:254)(AP255;255:255)(AP256;256:256)(AP257;257:257)(AP258;258:258)(AP259;259:259)(AP260;260:260)(AP261;261:261)(AP262;262:262)(AP263;263:263)(AP264;264:264)(AP265;265:265)(AP266;266:266)(AP267;267:267)(AP268;268:268)(AP269;269:269)(AP270;270:270)(AP271;271:271)(AP272;272:272)(AP273;273:273)(AP274;274:274)(AP275;275:275)(AP276;276:276)(AP277;277:277)(AP278;278:278)(AP279;279:279)(AP280;280:280)(AP281;281:281)(AP282;282:282)(AP283;283:283)(AP284;284:284)(AP285;285:285)(AP286;286:286)(AP287;287:287)(AP288;288:288)(AP289;289:289)(AP290;290:290)(AP291;291:291)(AP292;292:292)(AP293;293:293)(AP294;294:294)(AP295;295:295)(AP296;296:296)(AP297;297:297)(AP298;298:298)(AP299;299:299)(AP300;300:300)(AP301;301:301)(AP302;302:302)(AP303;303:303)(AP304;304:304)(AP305;305:305)(AP306;306:306)(AP307;307:307)(AP308;308:308)(AP309;309:309)(AP310;310:310)(AP311;311:311)(AP312;312:312)(AP313;313:313)(AP314;314:314)(AP315;315:315)(AP316;316:316)(AP317;317:317)(AP318;318:318)(AP319;319:319)(AP320;320:320)(AP321;321:321)(AP322;322:322)(AP323;323:323)(AP324;324:324)(AP325;325:325)(AP326;326:326)(AP327;327:327)(AP328;328:328)(AP329;329:329)(AP330;330:330)(AP331;331:331)(AP332;332:332)(AP333;333:333)(AP334;334:334)(AP335;335:335)(AP336;336:336)(AP337;337:337)(AP338;338:338)(AP339;339:339)(AP340;340:340)(AP341;341:341)(AP342;342:342)(AP343;343:343)(AP344;344:344)(AP345;345:345)(AP346;346:346)(AP347;347:347)(AP348;348:348)(AP349;349:349)(AP350;350:350)(AP351;351:351)(AP352;352:352)(AP353;353:3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I was able to solve this by installing the latest neo from github
pip install git+https://github.com/NeuralEnsemble/python-neo.git
I'm getting this error when trying to load a spikeglx recording of the new long neuropixels:
NotImplementedError: This meta file version of spikeglxis not implemented
I'm using the most recent spikeinterface installed from github today.
Here's the info from the meta file:
acqApLfSy=384,384,1 appVersion=20230905 fileCreateTime=2023-12-22T11:53:44 fileName=D://122223_g0/122223_g0_imec0/122223_g0_t0.imec0.ap.bin fileSHA1=58569735F67F75C7AEA059DDE8C3C78FEC6805DA fileSizeBytes=77965530720 fileTimeSecs=3375.1312 firstSample=3556716 gateMode=Immediate imAiRangeMax=0.6 imAiRangeMin=-0.6 imAnyChanFullBand=false imCalibrated=true imChan0apGain=500 imDatApi=3.62 imDatBs_fw=2.0.169 imDatBsc_fw=3.2.189 imDatBsc_hw=2.1 imDatBsc_pn=NP2_QBSC_00 imDatBsc_sn=207 imDatFx_hw=3.6 imDatFx_pn=NPNH_AFLEX_00 imDatFx_sn=0 imDatHs_hw=5.1 imDatHs_pn=NP2_HS_30 imDatHs_sn=835 imDatPrb_dock=1 imDatPrb_pn=NP1032 imDatPrb_port=4 imDatPrb_slot=2 imDatPrb_sn=22176116182 imDatPrb_type=1030 imErrFlags_IS_CT_SR_LK_PP_SY=0 0 0 0 0 0 imIsSvyRun=false imLEDEnable=false imLowLatency=false imMaxInt=512 imSampRate=30000 imStdby= imSvyMaxBnk=11 imSvySecPerBnk=15 imTipLength=373 imTrgRising=true imTrgSource=0 imroFile= nDataDirs=1 nSavedChans=385 snsApLfSy=384,0,1 snsSaveChanSubset=0:383,768 syncImInputSlot=2 syncSourceIdx=0 syncSourcePeriod=1 trigMode=Immediate typeImEnabled=1 typeNiEnabled=0 typeObEnabled=0 typeThis=imec userNotes= ~imroTbl=(1030,384)(0 0 0 500 250 1)(1 0 0 500 250 1)(2 0 0 500 250 1)(3 0 0 500 250 1)(4 0 0 500 250 1)(5 0 0 500 250 1)(6 0 0 500 250 1)(7 0 0 500 250 1)(8 0 0 500 250 1)(9 0 0 500 250 1)(10 0 0 500 250 1)(11 0 0 500 250 1)(12 0 0 500 250 1)(13 0 0 500 250 1)(14 0 0 500 250 1)(15 0 0 500 250 1)(16 0 0 500 250 1)(17 0 0 500 250 1)(18 0 0 500 250 1)(19 0 0 500 250 1)(20 0 0 500 250 1)(21 0 0 500 250 1)(22 0 0 500 250 1)(23 0 0 500 250 1)(24 0 0 500 250 1)(25 0 0 500 250 1)(26 0 0 500 250 1)(27 0 0 500 250 1)(28 0 0 500 250 1)(29 0 0 500 250 1)(30 0 0 500 250 1)(31 0 0 500 250 1)(32 0 0 500 250 1)(33 0 0 500 250 1)(34 0 0 500 250 1)(35 0 0 500 250 1)(36 0 0 500 250 1)(37 0 0 500 250 1)(38 0 0 500 250 1)(39 0 0 500 250 1)(40 0 0 500 250 1)(41 0 0 500 250 1)(42 0 0 500 250 1)(43 0 0 500 250 1)(44 0 0 500 250 1)(45 0 0 500 250 1)(46 0 0 500 250 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