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SpikeInterface / spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.
https://spikeinterface.readthedocs.io
MIT License
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about templates_average.npy #3291

Open ohkoibln opened 2 months ago

ohkoibln commented 2 months ago

Hi , I used kilosort2 and got my results. However, my templates_average.npy has lots of zero, which I think whether I set something wrong?

chrishalcrow commented 2 months ago

Hi @ohkoibln , it would be helpful to see more details of what you did. Could you post some of your code? It would be great to see any preprocessing steps you applied and the line where you call kilosort.

zm711 commented 2 months ago

Also what is templates_averages.npy. That file is not written by Kilosort2 and is not exported by spikeinterface. And with version 0.101.0 of spikeinterface you would have an average.npy file in the templates folder of extensions. So I agree with Chris. Without seeing what you did and what version of spikeinterface you were using we can't really help you.

ohkoibln commented 2 months ago

还有什么templates_averages.npy。该文件不是由 Kilosort2 编写的，也不是由 spikeinterface 导出的。使用 0.101.0 版本的 spikeinterface，您会average.npy在扩展的 templates 文件夹中看到一个文件。所以我同意 Chris 的观点。如果看不到您做了什么以及您使用的是哪个版本的 spikeinterface，我们真的无法帮助您。

Yes, It's average.npy. I think I set some pars too strictly.

alejoe91 commented 2 months ago

@ohkoibln still unsure where you are getting the average.npy file. Kilosort2 should not produce such file.. can you paste the script that you're running?