Unable to sort from container

SpikeInterface / spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

https://spikeinterface.readthedocs.io

MIT License

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Unable to sort from container #3353

Open ebach23 opened 2 months ago

ebach23 commented 2 months ago

I have been trying to use sorters within the container (tried a few different sorters). I keep getting the same error message that docker is not installed despite docker being installed. Can you help me understand? TIA

Fail message

alejoe91 commented 2 months ago

How did you install docker? Can you try a docker run hello-world from terminal?

DaohanZhang commented 2 months ago

I have encountered the same question, maybe it is the problem of jupyter notebook (I m not sure). Try using python script in terminal after this command:

newgrp docker

JoeZiminski commented 1 month ago

Are you running on linux or macOS / Windows?