StaPH-B / docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
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adding pango_aliasor version 0.3.0 #1011

Closed erinyoung closed 1 month ago

erinyoung commented 2 months ago

pango_aliasor is not new to the community, but it is new to docker-builds.

pango_aliasor takes pangolin lineages, such as P.1.12.1, and translates them back to their parental lineage, which would be B.1.1.28.1.12.1 for P.1.12.1.

pango_aliasor updates about as frequently as Freyja, meaning that official version updates are few, but the alias key is constantly being updated. When this gets merged into the repository, I'd like to set up a github action like Freyja in order to keep the alias key current.

pango_aliasor is a python package without a real executable on the command line. As such, I've added a script (aliasor.py) that I use in house - because that makes life easy for me.

Pull Request (PR) checklist:

Kincekara commented 1 month ago

Thank you for putting all these together! Deploy link: https://github.com/StaPH-B/docker-builds/actions/runs/10319938717