update amrfinder

[Kincekara]

Closes #1024

• db updated
• blast updated
• increased threads to 4 in the custom tests

  diff ncbi-amrfinderplus/3.12.8-2024-05-02.2/Dockerfile ncbi-amrfinderplus/3.12.8-2024-07-22.1/Dockerfile
  4,5c4,5
  < ARG AMRFINDER_DB_VER="2024-05-02.2"
  < ARG BLAST_VER="2.15.0"
  ---
  > ARG AMRFINDER_DB_VER="2024-07-22.1"
  > ARG BLAST_VER="2.16.0"
  91,92c91,92
  <   amrfinder --threads 1 --plus --nucleotide GCA_010941835.1_PDT000052640.3_genomic.fna --output test1.txt && \
  <   amrfinder --threads 1 --plus --nucleotide GCA_010941835.1_PDT000052640.3_genomic.fna --organism Salmonella --output test2.txt && \
  ---
  >   amrfinder --threads 4 --plus --nucleotide GCA_010941835.1_PDT000052640.3_genomic.fna --output test1.txt && \
  >   amrfinder --threads 4 --plus --nucleotide GCA_010941835.1_PDT000052640.3_genomic.fna --organism Salmonella --output test2.txt && \
  98c98
  <   amrfinder --threads 1 --plus --name GCA_003812925.1 -n GCA_003812925.1_ASM381292v1_genomic.fna  -O Klebsiella_oxytoca -o GCA_003812925.1-amrfinder.tsv 
  ---
  >   amrfinder --threads 4 --plus --name GCA_003812925.1 -n GCA_003812925.1_ASM381292v1_genomic.fna  -O Klebsiella_oxytoca -o GCA_003812925.1-amrfinder.tsv 
  diff ncbi-amrfinderplus/3.12.8-2024-05-02.2/README.md ncbi-amrfinderplus/3.12.8-2024-07-22.1/README.md
  8c8
  < - ncbi-blast+ v2.15.0
  ---
  > - ncbi-blast+ v2.16.0

Pull Request (PR) checklist:

• [x] Include a description of what is in this pull request in this message.
• [x] The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
• [x] Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
  • [ ] (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
• [x] Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
  • [ ] If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• [x] Dockerfile includes the recommended LABELS
• [x] Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• [x] Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

[kapsakcj]

deploy workflow here: https://github.com/StaPH-B/docker-builds/actions/runs/10285544934

I used this for the docker image tag 3.12.8-2024-07-22.1 and overwrote the latest tag