Closed Kincekara closed 1 month ago
The tests worked
#13 [test 2/2] RUN skani dist e.coli-EC590.fasta e.coli-K12.fasta
#13 0.093 [00:00:00.000] (7fb9e99dd080) INFO skani dist e.coli-EC590.fasta e.coli-K12.fasta
#13 0.136 [00:00:00.043] (7fb9e99dd080) INFO Learned ANI mode detected. ANI may be adjusted according to a regression model trained on MAGs.
#13 0.136 [00:00:00.043] (7fb9e99dd080) INFO Generating sketch time: 0.043402895
#13 0.146 [00:00:00.053] (7fb9e99dd080) INFO ANI calculation time: 0.009702218
#13 0.146 Ref_file Query_file ANI Align_fraction_ref Align_fraction_query Ref_name Query_name
#13 0.146 e.coli-K12.fasta e.coli-EC590.fasta 99.39 91.89 92.46 NC_007779.1 Escherichia coli str. K-12 substr. W3110, complete sequence NZ_CP016182.2 Escherichia coli strain EC590 chromosome, complete genome
Skani has a new version including a new feature and bugfixes. I also updated rust builder image and cleaned up readme comments
Pull Request (PR) checklist:
docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15
)spades/3.12.0/Dockerfile
)shigatyper/2.0.1/test.sh
)spades/3.12.0/README.md
)