add pasty 2.1.0

[Kincekara]

Closes #1025 Since pasty started to use camlhmp, I rewrote the dockerfile with micromamba. Also, I changed the readme file parallel to the new version.

Pull Request (PR) checklist:

• [x] Include a description of what is in this pull request in this message.
• [x] The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
• [x] Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
  • [ ] (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
• [x] Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
  • [ ] If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• [x] Dockerfile includes the recommended LABELS
• [x] Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• [x] Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

[erinyoung]

The tests looked like worked:

#10 11.51 sample    type    targets coverage    hits    schema  schema_version  camlhmp_version params  comment
#10 11.51 NT-GCF_000292685  -               pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   A type could not be determined
#10 11.51 O1-GCF_001420225  O1  O1  100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O10-GCF_001444835 O10 O10 100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O11-GCF_001444955 O11 O11 100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O12-GCF_001444975 O12 O12 100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O13-GCF_001444995 O13 O13 100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O15-GCF_001444865 O15 O15 100.00  7   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   Coverage based on 7 hits;There were one or more overlapping hits
#10 11.51 O17-GCF_001444915 O17 O17 100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O2-GCF_001420185  O2  O2,wzyB 100.00,100.00   1,1 pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O3-GCF_001420205  O3  O3  100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O4-GCF_001420245  O4  O4  100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O5-GCF_001420265  O5  O2  100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O6-GCF_001444755  O6  O6  100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O7-GCF_001444745  O7  O7  100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   
#10 11.51 O9-GCF_001444815  O9  O9  100.00  1   pasty   2.1.0   1.0.0   min-coverage=95;min-pident=95   

[erinyoung]

Since pasty started to use camlhmp, I rewrote the dockerfile with micromamba.

This sounds like quite the saga

[erinyoung]

Thank you for putting this together! (It sounds like it was a lot of work)

You can check the status of the deploy here: https://github.com/StaPH-B/docker-builds/actions/runs/10603737345

[erinyoung]

Actually, it looks like I'm running into an error. I'm rerunning the GA action here: https://github.com/StaPH-B/docker-builds/actions/runs/10603737345

[erinyoung]

Aaannnddd.... it's looking like that tag has been removed from the github archive. Do you think version 2.2.1 would have the same problem?