StaPH-B / docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
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update tbprofiler to version 6.3.0 #1070

Closed erinyoung closed 2 weeks ago

erinyoung commented 3 weeks ago

There's a new version of tbprofiler!

According to the release notes this is a critical update that will change some calls.

I copied the file from 6.2.1 and updated the version number and the database commit hash.

The full diff:

 diff tbprofiler/6.2.1/Dockerfile tbprofiler/6.3.0/Dockerfile 
6c6
< ARG TBPROFILER_VER="6.2.1"
---
> ARG TBPROFILER_VER="6.3.0"
10,11c10,11
< # this was the latest commit as of 2024-05-10
< ARG TBDB_COMMIT="97b5876a1a9d2f06e8bb6076ed88baf481ef5fe5"
---
> # this was the latest commit as of 2024-08-29
> ARG TBDB_COMMIT="4907915526b52ac2f20f1324613f5d4dc951e0bd"
45,47d44
< # In 5.0.1 updating_tbdb does not work with tb-profiler update_tbdb --commit ${TBDB_VER}
< #  ^^ this was resolved in 6.2.1
< #RUN tb-profiler update_tbdb -h && whatever
50d46
< 

Pull Request (PR) checklist:

Kincekara commented 2 weeks ago

Thank you for the update! The tests were good. Merged and deployed: https://github.com/StaPH-B/docker-builds/actions/runs/11163487796