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StaPH-B / docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
GNU General Public License v3.0
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[Repo Request]: New Templates #750

Open erinyoung opened 1 year ago

erinyoung commented 1 year ago

What functionality is this repo missing?

We have several templates available in dockerfile-template, but there could be more that may be useful.

Additional templates: [ ] R-packages (like ggtree) [ ] tools that are snakemake wrappers (like ncov-recombinant)

kapsakcj commented 9 months ago

Might be nice to have a rust template too? Not super important but would be nice for rust-based binfie tools!

Could start with the Dockerfile added for sylph in PR #816

kapsakcj commented 8 months ago

Perhaps uses this as a starting point for snakemake-based tools? https://github.com/snakemake/snakemake/blob/main/Dockerfile

kapsakcj commented 8 months ago

Could be useful for creating a dockerfile for a snakemake workflow: https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#containerization-of-conda-based-workflows