iqtree2 version 2.3.4

[erinyoung]

There's a new version of iqtree2!

There are some bug fixes and mixture options.

Full release log : https://github.com/iqtree/iqtree2/releases/tag/v.2.3.4

The prebuilt binary path is now different. I first tried "linux-arm", but that didn't run. "linux-intel" runs the tests as expected.

The full difference between dockerfiles version 2.3.1 and 2.3.4:

$ diff iqtree2/2.3*/Dockerfile
1c1
< ARG IQTREE2_VER="2.3.1"
---
> ARG IQTREE2_VER="2.3.4"
29,31c29,31
< RUN wget https://github.com/iqtree/iqtree2/releases/download/v${IQTREE2_VER}/iqtree-${IQTREE2_VER}-Linux.tar.gz && \
<     tar -xvf iqtree-${IQTREE2_VER}-Linux.tar.gz && \
<     rm -v iqtree-${IQTREE2_VER}-Linux.tar.gz && \
---
> RUN wget -q https://github.com/iqtree/iqtree2/releases/download/v.${IQTREE2_VER}/iqtree-${IQTREE2_VER}-Linux-intel.tar.gz && \
>     tar -xvf iqtree-${IQTREE2_VER}-Linux-intel.tar.gz && \
>     rm -v iqtree-${IQTREE2_VER}-Linux-intel.tar.gz && \
35c35
< ENV PATH="/iqtree-${IQTREE2_VER}-Linux/bin:${PATH}"\
---
> ENV PATH="/iqtree-${IQTREE2_VER}-Linux-intel/bin:${PATH}"\
52c52
< RUN iqtree2 -s /iqtree-${IQTREE2_VER}-Linux/example.phy --rate
---
> RUN iqtree2 -s /iqtree-${IQTREE2_VER}-Linux-intel/example.phy --rate

Pull Request (PR) checklist:

• [X] Include a description of what is in this pull request in this message.
• [X] The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
• [X] Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
  • [X] (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
• [X] Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
  • [X] If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• [X] Dockerfile includes the recommended LABELS
• [X] Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• [X] Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

[Kincekara]

Thank you for the update! Deploy link: https://github.com/StaPH-B/docker-builds/actions/runs/9163795811.

[Kincekara]

@erinyoung failed on deployment. I think the binary link has changed.