StaPH-B / docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
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rasusa version 2.0.0 #981

Closed erinyoung closed 3 months ago

erinyoung commented 3 months ago

There's a new version of rasusa!

And rasusa has changed how it runs, so people using the 'latest' tag are going to have things break.

More information here : https://github.com/mbhall88/rasusa/releases

I have updated the readme to reflect some of the usage changes.

In the dockefile, I updated the version arg and the test command.

The full diff:

$ diff rasusa/0.8.0/Dockerfile rasusa/2.0.0/Dockerfile 
3c3
< ARG RASUSA_VER="0.8.0"
---
> ARG RASUSA_VER="2.0.0"
53c53
<     rasusa -i SRR13957123_1.fastq.gz SRR13957123_2.fastq.gz -n 40434 -s 1 -O g -o SRR13957123_downsampled_1.fastq.gz SRR13957123_downsampled_2.fastq.gz && \
---
>     rasusa reads --num 40434 -s 1 -O g -o SRR13957123_downsampled_1.fastq.gz -o SRR13957123_downsampled_2.fastq.gz SRR13957123_1.fastq.gz SRR13957123_2.fastq.gz && \

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Kincekara commented 3 months ago

Thank you fro the update! Deploy link: https://github.com/StaPH-B/docker-builds/actions/runs/9101397186