StaPH-B / docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
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adding metaphlan version 4.1.1 #996

Closed erinyoung closed 3 months ago

erinyoung commented 3 months ago

There's a new version of metaphlan!

According to the release notes, there are some new features https://github.com/biobakery/MetaPhlAn/releases/tag/4.1.1

There are new, updated databases, but these are not intended to be included in the image.

Since the conda bin is in path, we don't need the mamba dockerfile activate, so I've removed it.

Here are is the diff between 4.1.0 and 4.1.1:

$ diff metaphlan/4.1.0/Dockerfile metaphlan/4.1.1/Dockerfile 
1c1
< FROM mambaorg/micromamba:1.5.6 as app
---
> FROM mambaorg/micromamba:1.5.8 as app
3c3
< ARG METAPHLAN_VER="4.1.0"
---
> ARG METAPHLAN_VER="4.1.1"
9c9
< LABEL base.image="mambaorg/micromamba:1.5.6"
---
> LABEL base.image="mambaorg/micromamba:1.5.8"
36,37c36
< ENV ENV_NAME="base"
< ARG MAMBA_DOCKERFILE_ACTIVATE=1
---
> RUN metaphlan --help

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Kincekara commented 3 months ago

Thank you for the update! I just added -f to the micromamba clean line. Deploy link: https://github.com/StaPH-B/docker-builds/actions/runs/9767620045