A review of each task in the Titan Illumina PE workflow is needed (Titan WDL). Ideally, each task will be reviewed by 2 people with a focus on the parameter settings to ensure that the parameters are set appropriately and make sense for the broader application of this workflow.
Please perform the following for each Task:
Examine the docker container is correct with correct version
Examine the correct application command is used
Examine the parameters used for each application
Make a note or update any hard coded parameters or flags that will need to be added to the configuration
Make a note or update the code for any missing parameters that need to be added
Please comment here with the task you reviewed and perform a pull request on any updates or changes to the code.
A review of each task in the Titan Illumina PE workflow is needed (Titan WDL). Ideally, each task will be reviewed by 2 people with a focus on the parameter settings to ensure that the parameters are set appropriately and make sense for the broader application of this workflow.
Please perform the following for each Task:
Please comment here with the task you reviewed and perform a pull request on any updates or changes to the code.