One stop shot for processing raw data into data dump: ddPCR, qPCR, Std curve

StadlerlabRice / WW-CoV2-project

Plotting qPCR and ddPCR data for WWTPs

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One stop shot for processing raw data into data dump: ddPCR, qPCR, Std curve #16

Closed ppreshant closed 4 years ago

ppreshant commented 4 years ago

Convert ddPCR_labeller.R, analysis.R into formulas (Standard curve has already been converted)

Write up a script that looks at the name

if dd.WW then run the ddPCR labeller, else go below
if Std is included in the file name, run standard curve function (outputs parameters to a std curve sheet in dump)
then run the analysis (which brings the Std curve parameters)

ppreshant commented 4 years ago

This script should be named -process_single_run.R (can input qPCR or ddPCR and combine the processing in a third function to reduce redundancy)

And a second script (process_multiple_runs.R) takes multiple related runs and combines their data and processes into output files (all the processing will be copied here from the current make_html_qPCR.rmd file) and calls a rmd only for the plots