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StadlerlabRice / WW-CoV2-project

Plotting qPCR and ddPCR data for WWTPs
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Streamlining #20

Closed ppreshant closed 4 years ago

ppreshant commented 4 years ago

Major changes:

  1. Autosave (append) standard curve parameters and update for each file with matching Stdxx in name.
  2. Save baylor names into a 96 well format: appends tosample registry/ '96 well RNA' sheet
  3. Making analysis.R, ddPCR_labeller.R and standard_curve.R run as functions (can chain them for a clean pipeline -> next improvement)

Minor changes

  1. Standardizing urls of google sheets
  2. Check_ok_write - replaced askYesNo() with menu()
  3. Removed unnecessary raw plots
  4. Changed variable names that were holding data sets
  5. Safe exit for missing datasets in plotting functions: Jitter and scatter plot fix #6, #7, #12