Decide on data storage based on needs.

JJ commented 5 years ago

Check out Neo4J or other graph database
Check out Bio4J or its underlying database (Vulcan, I think)

thebooort commented 5 years ago

@JJ Suggested today the usage of Elastic https://www.elastic.co/ (is that the right link?)

Gecofer commented 5 years ago

@JJ Suggested today the usage of Elastic https://www.elastic.co/ (is that the right link?)

This sample application demonstrates:

Indexing recipes using the Java Client API and
Using the Java Client API to searching for recipes by keywords

https://github.com/elastic/examples/tree/master/Search/recipe_search_java

JJ commented 5 years ago

Good catch, also. Trying to find the way it's stored, but it's not easy.

JJ commented 5 years ago

Ah, it's a JSON: https://github.com/elastic/examples/blob/master/Search/recipe_search_java/data/banana-oatmeal-cookie.json

jimcase commented 5 years ago

I found this interesting article: https://thenewstack.io/tinkerpop-growing-graph-database-popularity/ In Summary: "Tinkerpop is a graph computing framework for tying together relational and graph databases in one unified model, which just became a top-level project with the Apache Software Foundation." http://tinkerpop.apache.org/ Tinkerpop use Gremlin, "a graph traversal machine and language, which enables users to write complex queries called traversals that can execute either as real-time transactional (OLTP) queries, batch analytic graph (OLAP) queries, or a hybrid of the two"

It's open source Amazon use it for its order fulfillment graph

Documentation: http://tinkerpop.apache.org/docs/current/reference/ Tutorial: https://kelvinlawrence.net/book/Gremlin-Graph-Guide.html Gremlin-Python for Apache TinkerPop: https://pypi.org/project/gremlinpython/

With Tinkerpop 3.4.0 API we can use the next database tools: http://tinkerpop.apache.org/javadocs/current/full/ Some examples:

Neo4j
Hadoop
Elastic (https://github.com/rmagen/elastic-gremlin)
Spark
Apache Giraph

jimcase commented 5 years ago

Github repo: https://github.com/apache/tinkerpop Last release 3.4.0 in 04/01/209, so currently maintained and updated

jimcase commented 5 years ago

Azure Cosmos DB can be used with Gremlin API to build graphs storage.

Introduction to Azure Cosmos DB: Gremlin API https://docs.microsoft.com/en-us/azure/cosmos-db/graph-introduction

Being more specific to our domain: Quickstart: Create a graph database in Azure Cosmos DB using Python and the Azure portal https://docs.microsoft.com/en-us/azure/cosmos-db/create-graph-python

Stance4Health-Dev / docs

Decide on data storage based on needs. #4