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StanfordBioinformatics / loom

A tool for running bioinformatics workflows locally or in the cloud.
GNU Affero General Public License v3.0
29 stars 8 forks source link

ImportError: No module named functools32 #461

Closed pbilling closed 6 years ago

pbilling commented 6 years ago 
$ loom test unit
Traceback (most recent call last):
<...>
  File "/Users/pbilling/Documents/GitHub/loom/loom_libs/lib/python2.7/site-packages/jsonschema/compat.py", line 35, in <module>
    from functools32 import lru_cache
ImportError: No module named functools32
$ pip install --upgrade functools32
Requirement already up-to-date: functools32 in /Library/Python/2.7/site-packages
$ pip freeze
<...>
backports.functools-lru-cache==1.2.1
functools32==3.2.3.post2
nhammond commented 6 years ago

Issue caused by DNAnexus SDK installer modifying PYTHONPATH in .bashrc. Fixed by un-setting their changes.