ENCODE data submission: missing IP ENCSR477JXX

StanfordBioinformatics / pulsar_lims

A LIMS for ENCODE submitting labs.

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ENCODE data submission: missing IP ENCSR477JXX #299

Open twang15 opened 3 years ago

twang15 commented 3 years ago

https://www.encodeproject.org/experiments/ENCSR477JXX/

twang15 commented 3 years ago

Hi Annika,

The experiment cs-252 https://www.encodeproject.org/experiments/ENCSR635VTR/ does not have any IPs in pulsar. But I need them to resolve its input library (https://www.encodeproject.org/experiments/ENCSR477JXX/) "missing biosample characterization" issue.

What shall we do about it?

Best, Tao

twang15 commented 3 years ago

Hi Tao, not sure why it’s not in pulsar. We should ask the team. It’s on the portal though https://www.encodeproject.org/experiments/ENCSR635VTR/

We are repeating one rep at the moment, because of insufficient IDR.

twang15 commented 3 years ago

Hi Joan,

Could you please take a look into the missing IPs for cs-252 in pulsar?

Thanks, Tao

twang15 commented 3 years ago

Hi Annika,

We already submitted data for cs-252 (https://www.encodeproject.org/experiments/ENCSR635VTR/). Joan said that it actually failed. Shall we tell DCC about this?

Best, Tao

twang15 commented 3 years ago

Hi Tao,

I found the ELK3's IP-WB image and added to B-11322 (eGFP-ELK3-SK-N-SH ) master.

IB-537, GEL-810

Best, Joan

twang15 commented 3 years ago

Hi Tao,

We repeated rep3 and 4 as technical reps to 1 and 2.

So the IP is the same for 1/3 and 2/4.

Thanks

twang15 commented 3 years ago

Hi Joan,

Thanks for your information. I have use IP of B-11322 for B-11323.

@Annika, I only see rep1 and rep2 in pulsar for cs-252. Do you mean cs-370 have rep3 and rep4 for cs-252? We have both cs-252 and cs-370 submitted on the portal separately. Should they be combined instead?

Thanks, Tao