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StanfordBioinformatics / pulsar_lims

A LIMS for ENCODE submitting labs.
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10X pipeline and single-cell multiome dataset processing #484

Open twang15 opened 3 years ago

twang15 commented 3 years ago

Annika and I want to speed up the processing of single-cell multiome datasets.

So I may need to install 10X pipeline on SCG.

To check out what is already there, I have to:

  1. Talk to Ramesh
  2. Talk to John

Otherwise, I will need to install 10X on SCG myself. here is the guide: https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/what-is-cell-ranger-arc

twang15 commented 3 years ago

Hi Annika,

Here is the github issue to track this process: https://github.com/StanfordBioinformatics/pulsar_lims/issues/484

Best, Tao