StanfordBioinformatics / pulsar_lims

A LIMS for ENCODE submitting labs.
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ENCODE data submission: resubmit IP for ENCSR724QJT #937

Closed twang15 closed 2 years ago

twang15 commented 2 years ago

Previous IP for this ChIP fails the review https://www.encodeproject.org/experiments/ENCSR724QJT/

New ones have to be submitted

twang15 commented 2 years ago

Hi Tao,

Lixia submitted new IPs to Pulsar that can be submitted to ENCODE.

https://pulsar-encode.herokuapp.com/biosamples/3094

https://pulsar-encode.herokuapp.com/biosamples/12099

https://pulsar-encode.herokuapp.com/biosamples/12098

https://pulsar-encode.herokuapp.com/biosamples/10453

After the submission we should tell Jennifer so that she can send the links to Mark for review.

Thank you! Annika

twang15 commented 2 years ago

Is IP https://pulsar-encode.herokuapp.com/biosamples/3094 for both https://pulsar-encode.herokuapp.com/biosamples/13867 and https://pulsar-encode.herokuapp.com/biosamples/12975 or one of them?

Thanks, Tao

twang15 commented 2 years ago

Yes

-Annika

twang15 commented 2 years ago

IP for https://pulsar-encode.herokuapp.com/biosamples/3094 (child biosamples: https://pulsar-encode.herokuapp.com/biosamples/13867 and https://pulsar-encode.herokuapp.com/biosamples/12975) has been submitted

twang15 commented 2 years ago

IPs Submitted: https://pulsar-encode.herokuapp.com/biosamples/12099 https://pulsar-encode.herokuapp.com/biosamples/12098

twang15 commented 2 years ago

For https://pulsar-encode.herokuapp.com/biosamples/10453, we really need to submit the IP for its two bio samples. With Jennifer's help, it is done.

Hi Tao,

Mark has completed his review of the characterization https://www.encodeproject.org/biosample-characterizations/26e53643-5df9-4178-8235-5809446420af/ for ENCBS996JKE. I have posted a copy of the characterization and linked it to ENCBS120PYB: https://www.encodeproject.org/biosample-characterizations/e85383bd-693c-4d68-a321-899927e4ea4f/

Please let me know if you notice any issues!

Jennifer

twang15 commented 2 years ago

Hi Jennifer,

Thanks for your help!

Best, Tao

twang15 commented 2 years ago

Hi Annika,

These Ips have been successfully submitted to the ENCODE portal.

Best, Tao