ENCODE data submission: IP submission for several ChIPs

StanfordBioinformatics / pulsar_lims

A LIMS for ENCODE submitting labs.

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ENCODE data submission: IP submission for several ChIPs #944

Closed twang15 closed 2 years ago

twang15 commented 2 years ago

HiTao,

I am working through ENCODE stuff in preparation for the meeting on Thursday. Could you fix the following four things?

ENCSR701SED - rep 1 missing characterization: add GELI-354 ENCSR151WAM - rep 1 missing characterization: add Gel-360 ENCSR928DXV, please replace with GELI-491 Biosamples should be treated with RA: link

Thank you, let me know if you have questions, Annika

twang15 commented 2 years ago

IP posted for https://www.encodeproject.org/experiments/ENCSR701SED/

twang15 commented 2 years ago

IP posted for https://www.encodeproject.org/experiments/ENCSR151WAM/

twang15 commented 2 years ago

IPs replaced for https://www.encodeproject.org/experiments/ENCSR928DXV/

twang15 commented 2 years ago

Hi Annika,

I have submitted the IPs. But I don’t understand what you mean for the last one: “Biosamples should be treated with RA: link”

Could you explain a bit?

Best, Tao

twang15 commented 2 years ago

Add treatment to biosamples:

https://www.encodeproject.org/search/?type=Experiment&control_type!=*&assay_term_name=ChIP-seq&replicates.library.biosample.donor.organism.scientific_name=Homo+sapiens&biosample_ontology.term_name=SK-N-SH&replicates.library.biosample.treatments!=*&lab.title=Michael+Snyder%2C+Stanford&award.rfa=ENCODE4

Treatment: https://www.encodeproject.org/treatments/2eb31f18-e297-4cde-ba99-36cd9c038629/