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StanfordBioinformatics / pulsar_lims

A LIMS for ENCODE submitting labs.
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Pulsar submission: multiome experiment for psychENCODE Alzheimer samples #966

Open twang15 opened 1 year ago

twang15 commented 1 year ago

https://docs.google.com/spreadsheets/d/14nAAJCgdEvK7cltiIKwY3hZAnn9IayiM-rUyqlljagM/edit#gid=0

create donors create biosamples email Emma when it is done

twang15 commented 1 year ago

multiome QC: https://drive.google.com/drive/u/2/folders/1TR0gCtb9r-6aZLg2_GFBE8UaScaCmSRC

Hi Tao,

The 15 ALS multiome samples are finished. These samples are rows 132-146 in our multiome tracker (SREQ 473/474 and SREQ 475/476). Can you run cell ranger on them so you learn the process. Attached again are the instructions for doing that.

Please try it out and let me know when you are done. If you get stuck, we can plan a zoom call for next week to discuss.

Emma

twang15 commented 1 year ago

cellRanger_forTao_052323.docx

twang15 commented 1 year ago

Hi Lixia and Emma,

The library information in row 135-142 for Alzheimer samples is missing. https://docs.google.com/spreadsheets/d/1c99pXa65QRmoNToQKxhgLEJtdJLSyCMf/edit#gid=429762948

Could you please fill it out so that I can continue?

Thanks, Tao