Add HAS_MATE_PAIR relationship between paired end fastqs

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Make it easier to find fastqs that are part of the same read group and provide as input to fastq-to-ubam job.

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Development

• [x] Create trigger: RelateFastqMatePairs
• [x] Create query: relateFastqMatePairs
• [x] Disable relatePersonalisSequencingToFastqs query as an activator for LaunchFastqToUbam
• [x] Disable relateFastqToPersonalisSequencing as an activator of LaunchFastqToUbam
• [x] Set relateFastqMatePair to activate LaunchFastqToUbam
• [x] Validate query/trigger pattern using OperationGrapher

Testing

• [x] Add Fastq R1 then R2
• [x] Add Fastq R2 then R1
• [x] Add Fastqs then PersonalisSequencing

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Diagram showing the database trigger/query pattern used to launch Fastq-to-ubam once Fastq objects have been added to the database. Database triggers start with a upper case letters and queries start with lower case letters.

graph TD;
  RelateFastqToPersonalisSequencing -- REQUESTS --> relateFastqToPersonalisSequencing
  relateFastqToPersonalisSequencing -- ACTIVATES --> RelateFastqMatePair
  RelatePersonalisSequencingToFastqs -- REQUESTS --> relatePersonalisSequencingToFastqs
  relatePersonalisSequencingToFastqs -- ACTIVATES --> RelateFastqMatePair
  RelateFastqMatePair --- REQUESTS --> relateFastqMatePair
  relateFastqMatePair -- ACTIVATES --> LaunchFastqToUbam
  LaunchFastqToUbam -- REQUESTS --> launchFastqToUbam