Hello, I think it's a great work for beginner like me to try python scRNAseq analysis.
But I not found some plot in qc parts. Such as sc.pl.pca_variance_ratio and violin plot for basic data shape.
Therefore, I believe that these fundamental methods of generating charge maps should be incorporated into the module or automatically generated. Otherwise, compared to the analyses performed by Scanpy, it seems challenging to comprehend the basic characteristics of the samples, especially for a new, untreated sample.
Hello, I think it's a great work for beginner like me to try python scRNAseq analysis. But I not found some plot in qc parts. Such as sc.pl.pca_variance_ratio and violin plot for basic data shape. Therefore, I believe that these fundamental methods of generating charge maps should be incorporated into the module or automatically generated. Otherwise, compared to the analyses performed by Scanpy, it seems challenging to comprehend the basic characteristics of the samples, especially for a new, untreated sample.