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Starlitnightly / omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
https://starlitnightly.github.io/omicverse/
GNU General Public License v3.0
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Kernel crash #141

Closed zhoushican closed 1 week ago

zhoushican commented 3 weeks ago

when I run the code

adata.obsm['X_pca']=adata.obsm['scaled|original|X_pca']
ov.utils.embedding(adata,
                  basis='X_pca',
                  color='CST3',
                  frameon='small')

the Kernel crash

the platform is WSL the code from t_preprocess_gpu.ipynb

Starlitnightly commented 1 week ago

It's probably a memory overflow. This issue is not related to the omicverse.