Closed colinwxl closed 1 month ago
Is it reasonable that sccomposite filter out almost half of the number of my cells. I have used sccomposite in ov.pp.qc with a batch_key='sample', and found out most of the cells was filtered out, which superized me a lot.
sccomposite
ov.pp.qc
That's surprising, but you can also manually check the data quality, after all, algorithms aren't perfect.
Is it reasonable that
sccomposite
filter out almost half of the number of my cells. I have usedsccomposite
inov.pp.qc
with a batch_key='sample', and found out most of the cells was filtered out, which superized me a lot.