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Starlitnightly / omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

https://starlitnightly.github.io/omicverse/

GNU General Public License v3.0

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To do list #2

Closed JuliaMYQ closed 1 year ago

JuliaMYQ commented 1 year ago

Repeat: Tutorial-Bulk

[x] Different Expression Analysis
[x] Protein-Protein interaction (PPI) analysis by String-db
[x] WGCNA (Weighted gene co-expression network analysis) analysis
[x] TCGA database preprocess

Tutorial-Single

[x] Celltype annotation with SCSA
[x] Drug response predict with scDrug
[x] Cell interaction with CellPhoneDB
[x] Multi omics analysis by MOFA
[x] Overlapping Celltype annotation with GNN

Test: