To do list in the version of `1.5.2` - Githubissues

Starlitnightly / omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

https://starlitnightly.github.io/omicverse/

GNU General Public License v3.0

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To do list in the version of `1.5.2` #32

Closed Starlitnightly closed 5 months ago

Starlitnightly commented 7 months ago

single cell RNA-seq

[x] Add DEseq2 to find marker of clusters
[x] Add MIRA to calculate the LDA and integrate scATAC-seq
[x] Add Palantir to calculate the pseudotime
[x] Add module of cluster included Leiden/Louvain/GMM

spatial RNA-seq

[x] Add whole pipeline to analysis spatial RNA-seq
[x] Add tangram to predicted cell fraction of spot
[x] Add STAGATE to cluster the stRNA-seq