Starlitnightly / omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
https://starlitnightly.github.io/omicverse/
GNU General Public License v3.0
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A problem about the TCGA survival analysis #46

Closed CocoGzh closed 3 days ago

CocoGzh commented 6 months ago

Dear authors, Thank you for your contribution to the community. I am having trouble with the TCGA Survival Analysis tutorial. Could you please provide me with the gdc_sample_sheet, gdc_download_files, and clinical_cart data? Alternatively, could you explain what the generated aml_tcga_raw.h5ad file contains? Best wishes, gzh

Starlitnightly commented 6 months ago

Hi,

The data can be downloaded from GDC:

f43e2417a01eb1075da46490599a3115