Starlitnightly / omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
https://starlitnightly.github.io/omicverse/
GNU General Public License v3.0
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Gene set enrichment analysis error : Exception: No gene sets passed through filtering condition #76

Closed asd519627326 closed 1 month ago

asd519627326 commented 1 month ago

Hello, when I intercept a part of "rnk" (e.g. 30 or 50 genes) for GSEA analysis, I get an error of "No gene sets passed through filtering condition", which seems to be related to the fold-change and p-value threshold settings in "deseq", or related to other parameter settings, but I tried to modify it, and failed to solve the problem, Do you have any suggestions?