To do list

[DBinary]

Update:

• [x] Preprocessing the data of scRNA-seq

Repeat: Tutorial-Bulk

• [x] Different expression analysis
• [x] Different expression analysis with DEseq2
• [x] Protein-Protein interaction (PPI) analysis by String-db
• [x] WGCNA (Weighted gene co-expression network analysis)
• [x] TCGA database preprocess

Tutorial-Single:

• [x] Preprocessing the data of scRNA-seq
• [x] Celltype annotation with SCSA
• [x] Trajectory Inference with VIA
• [x] Trajectory Inference with VIA and scVelo
• [x] Pathway analysis with AUCell
• [x] Different expression analysis in scRNA-seq
• [x] Drug response predict with scDrug
• [x] Cell interaction with CellPhoneDB
• [x] Multi omics analysis by MOFA
• [x] Multi omics analysis by MOFA and GLUE
• [x] Overlapping Celltype annotation with GNN (in progress)

Tutorial-Bulk2Single:

• [x] Bulk RNA-seq generate 'interrupted' cells to interpolate scRNA-seq
• [x] Bulk RNA-seq to scRNA-seq
• [x] scRNA-seq to Spatial RNA-seq